Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX251278: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-223617' containing sample 'Escherichia coli HVH 40 (4-1219782)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4M spots, 815.1M bases, 415Mb downloads

UUID: bd16d085-5fec-45e5-bd85-5641f562bb51

Design: Illumina sequencing of Escherichia coli HVH 40 (4-1219782) via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186072 • SRP019567 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 40 (4-1219782)

SAMN01885702 • SRS402182 • All experiments • All runs

Organism: Escherichia coli HVH 40 (4-1219782)

Library:

Name: Pond-223617

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 290831.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VYBV

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30710

research_project: RP-192

root_sample_id: SM-2TCXP

sample_id: SM-3VYBV

work_request: 35213

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-08 22:34:25.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 4M spots, 815.1M bases, 415Mb

Run	# of Spots	# of Bases	Size	Published
SRR785080	2,016,034	407.2M	207.5Mb	2013-03-18
SRR785081	2,019,165	407.9M	207.6Mb	2013-03-18

ID:: 351202

SRA

Sequence Read Archive

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